Updated with command line args and other windows specifics
Comment Updates & Some Minor Clean Up

Mostly just a test submission using the GitHub for Windows App and look
over of the current code.

Added some comments such as sub headers, and adjusted other comments.
Fixed up Loop.pl and started search.pl
Help Info Made Pretty!

Killed a little time making the help info look nicer and a bit more
standardized.
Merge pull request #4 from dimens369/master

Updated with command line args and other windows specifics