[FEATURE] Gustaf: SV classification feature initial commit
[FEATURE] Cyclic Shapes and the corresponding modified string and modified iterator
[INTERNAL] add include to header file
[TEST] Added tests for cyclic shapes
[INTERNAL] Gustaf: revised breakend trigger, adjusted app tests to ignore breakend output
[DOC] Better documentation of CyclicShapes
[DOC] Fixed Cyclic Shape documentation and cleaned up code using uncrustify
[TEST] Added a few tests for CyclicShape Modifier. But there seems to be a problem with ModifiedStrings in general
[DOC] tiny docu fix.
Merge branch 'feature/cyclicShapes' into develop
[DOC] Fixed whitespaces, line width and docu
[DOC] Fix intendation
[DOC] Fix @param
[FIX] typo
Merge branch 'develop' of https://github.com/seqan/seqan into develop
[INTERNAL] Gustaf: added svtype options, def start/end pos
Merge branch 'develop' of https://github.com/seqan/seqan into develop
[FIX] StringSet: fixed metafunction StringSetPosition<>
Merge branch 'develop' of https://github.com/seqan/seqan into develop
[INTERNAL] Gustaf: reduced gff out for breakends