add all required adaptors for all methods
required to work with direct database connection, which is all species but human
added fake funcgen database for vep compatibility
updated info test to include dummy funcgen database
Not all together functional update of Lookup endpoint to support POST. Tentative steps to allow partial result return, by moving Catalyst error calls out of the Model layer.
Missing condition that makes the endpoint populate the result hash.
Update help config to include symbol lookup POST. Replace ID copy-paste description with symbol description.
Alter Symbol endpoint action type and argument consumption.
beta.rest.ensembl.org url replaced with rest.ensembl.org
updated vep test output to match changes to variation checkout
deprecated method fetch_by_source_stable_id replaced with fetch_by_stable_id
adding ensembl-rest wiki as submodule to main repo
removed duplicated and outdatedChanges.md file
changelog and more information can be found up-to-date in the docs directory/ensembl-rest wiki
Cleanse SubRequest dependency from installation. SubRequest unit tests fail and make ends unsuccessfully.
error logging is now dealt with at the Controller level
the Model throws for any expected errors and the controller catches the errors in a try/catch block
test databases updated to schema 77
example contig updated
check if alignment exists before trying to do anything with it
stash is a method for content, should not be accessed directly
make charset latin explicit, else default mysql server might have keys that are too big
Fix error response behaviour and allow symbol POST requests.