Fixed pins on leds, capacitors, and sensor.
Regenerated netlist
Added thicker trace width to pcb
Mirrored molex.mod (I'm not sure this is right, Kicad may do this on its own)
Fixed square pin on jtag connectors
Added 20 mil keepout strip to boarder of circuit board according to Oshpark specs
Routed some more copper
All non-power traces now connected.