BioFetch.pm: Close first the filehandle and then test for a throw,
or the filehandle will remain open and block temporary file deletion
WebDBSeqI.pm: Close a filehandle from an object that
is not going to be used anymore, which was blocking file deletion
MeSH.pm: A possible format change in the html content broke
the parsing. The code was expecting just "<TD>" and found
"<TD colspan=1>", so changed the regex to be more flexible
(<TD(?: [^>]+)?>). Also added some cleanings to $desc
MeSH.t: Updated test to expect the current description of D012851
HTTPget.t: Fixed a "bareword not allowed" error
Consed.t: Removed the exclusion of Windows from the test file
since all tests pass fine
RemoteBlast.t: Increased a little the delay between retries
to connect to server (from 5 to 10 seconds), and fixed skip
tests number
hmmer.t: Fixed test that was using linux command "cat"
to use the equivalent command "type" in Windows
Changed "cat" to "find" to be used as an example of
an executable to be found in WBCommandExts.t,
CommandExts.pm and t/Tools/Run/Dummy/Config.pm.
The command "find" is preferred because it exists
both in linux and windows operating systems
Taxonomy/flatfile.pm: Added DESTROY method to remove filehandles
and delete temporal files
HIVQuery.t: Closed filehandle that was blocking deletion
of temporary file
core.t: Removed the additional file extension of a temporary file,
because the new file name was not registered for cleanup
like the old one, so it was not deleted on exit
(from v1.6.x branch, missing from master)
Bio::SeqIO::msout api_version 1.1.8
    msout can now output sequences with arbitrary finite lengths by
    mapping the haplotypes to a sequence of length n_sites.

    Thanks to Filipe G. Vieira <fgvieira@berkeley.edu> for the idea
    and code.
fix fussy test
Some cleaning of trailing spaces, added missing Changes
and bumped version to current Bio::Root::Version
Windows use 'NUL' instead of '/dev/null', so added the option
to use it when running in Windows
entrezgene: Fixed Bug #3453. Now code checks for multiple
entries for homology and products in "next_seq" and
"_process_products_coordinates". Added ASN.1 record example
from bug report as test input file.
StandAloneBlast & CommandExts: Apply double-quotes on
executable path if it contains whitespaces before trying to run it
CommandExts: My mistake, double-quotes in exe path are needed
when executing from system(), but they interfere when running from
IPC::Run::run(). Reverting it.
Edited SeqIO::genbank::_print_GenBank_FTHelper for bug #3455, SeqIO/genbank.t tests pass