Applying Dan Ss patch to the Adaptor
RegulatoryFeature: Added cell_type_count, has evidence. MirnaTargetFeature: added supporting information. Fantom: Bugfixes
Fixed conf skipping when already loaded
Updated fetch_all_by_linked_Transcript/transcript_Gene methods to assert_ref and test dbID
now flows garbage collection to MergeCollections
removed NHDF gender hack
Updated param checking, now has more useful error messages
A lot of updates, and EFGUtils usage added
many refinements to config
Moved rev_comp_matrix to new MotifTools. Also moved tmp dir creation to pwm_genome_map to reduce chance of deleting the wrong directory
now takes tab mapping file
removed backtick in favour of run_backtick_cmd and run_system_cmd. Fixed EFGUtils import
more run_system/backtick_cmd fixes and removed some unecessary tests
fixed open_file calls and row idx processing
Merge branch 'master' of https://github.com/Ensembl/ensembl-funcgen