report: Rename 'Conclusion' to 'Conclusions'
build/report: Invoke pdflatex three times
build/report: Add a make.log compilation report
report: Add subsection depth labels
build/tools: Fix stray file reference
bin/build: Invoke --all to disable configure args
configure: Return to root directory in dep install
configure: Install png and yaps2fsa dependencies
build/Documentation: Fix invalid variable syntax
scripts: Add a mksubmission script
report/introduction: Minor work
Documentation/plan: Remove files in binary formats
scripts/mksubmission: Don't verbosely clean repo
scripts/mksubmission: Clean up dotfiles