SubSample now does multiple sub-samplings
Allow choice of mapper as command line option to configure
Make FPKM targets for read subsets
MakeSummaryTable now plays nice with htseq-count

Options for different columns as value, as well as option to skip the
header.  Seemed easier than munging the output of htseq-count
Fewest reads go in the min subdir
Make a target variable that gives me all the subsets
Attempt at generalizing for different subsets
Script to read Picard output and plot it
Change AnalyzeFCs to make Pub ready figures
AnalyzeFCs now generates a latex table of results as well
Script to generate a mapped reads table
Fix bug in htseq-count call
Changes to plotSMARTs for publication ready figs