Small bug fixes in the average_atom_positions.py script
New key for stems in the virtual atoms index
Added an option for pseudoknots in visualize_pdb.py
Fixed the from_fasta function in bulge_graph
Added an example of printing the fasta representation of a structure in python
Replace the base T with U
Fixed the functionality of the minimum spanning tree function
added bpseq_to_bulge_graph.py
Added the get_connected_residues function
Display distances between two nucleotides, as well as batch mode
Added a section to get the node name from the residue number
Added the distance, output and batch options to visualize_pdb.py
Create coordinates for fiveprime regions when there are no stems
Minor documentation changes and average atom position calculations
Always add interior loops to the mst
Changed the version number and add ss_to_bulge_graph.py to the setup script
Added the cg_to_dotbracket.py file
Minor changes to the cg_to_ss_fasta.py file
Add the to to_bpseq_string script
Added cg_to_ss_fasta.py