Switch to output using BankBranch wrappers
Don't attempt to write to ouput during the setup stage where we are just peeking at the input, duh.
Clean up doxygen docs:
 * hide deprecated/ and unit_test/ directories from ddoxygen output
 * process "*.inc" files
Interface cahnges for BankBranch. In development, but deferred.
Checkpoint before switching to simple TGlobalData / TAnalysedPulseMapWrapper Wrapper temporary implemaentation.