lcb generation scripts
maf2synteny
fixed bug with tandem repeat
docs
some changes
coordinates tracking changed
maf alignment filtering
minor change
bulges
bulges removal
reorganization
merge
small fix
adhoc fixes for bulge removal
cactus + syntany backends
more accurate bulges removal
finding fragmented synteny blocks
merge with master
iterative synteny recovery
reuse of existing sibelia/cacts results