Add manual step to filter consensus sequences (eg whole-gene clonal target amplification) into subregions of research or clinical interest (eg HLA class I exons 2 and 3 representing the ARS)
Merge pull request #14 from ckennedy-nmdp/new-feature-branch

Filter groovy script (Sorry Michael)
necessary path fixes
Merge pull request #18 from janders3-nmdp/update_path_to_ngstools

necessary path fixes