Created a vcf_proc sub and moved alleles.xls directives to a sub. Add CLI opt to process either vcfExtractor output or alleles.xls. Added colored error messages. Some code cleanup
Reworked column format sub to be more generic and useful for any HoA that I might put through it.
Fixed alleles_proc sub
manual merge of new positions files
Fixed more positions based on VCF output
Patched in v4.1 tables.  Added two column lookup for XLS (0-based) or VCF (1-based) lookups
More fixes
Position revisions
Updated code to fix table lookups to match newer version
Think I finally have the VCF positions right?  Hope so!
Final code cleanup and release candidate for new version that will parse vcfExtractor output in the case we don't have an alleles.txt file
Added for v4 plasmids within OCP
Added NF1 COSM34041; missed it last time
Sorted tables to make it easier to read and find stuff
Fixed error message output in green for input file not found
Fixed VCF position for EGFR COSM6224...it was way off!
Fixed merged conflicts