Put the eclipse project files into the eclipse-workspace folder, removed a lot of "dirt"
forgot to add the eclipse workspace
removed an output that was testing nobletools
removed another useless output (old report)
Moved the java files to a better package representation.
Added a working ant build file inside the eclipse-workspace/CT.gov
folder. Should work fine for everyone that wants to run. All input and
output goes into ctgov-inout folder.
added a readme to explain the folders better
Merge pull request #22 from epicstar/master

Good progress on making the environment less tied to a specific eclipse project environ