Test
porting OBO file parser from BioJava 1 to BioJava 3 #33
adding a simple junit test
Added bond generation for mmCIF files
Merging with trunk
Merge branch 'master' of github.com:biojava/biojava
unit test to reproduce #106
only update original seqres groups, when matching worked without problems
more refactoring. Taking out BioJava1 change model. fixes #33 and #105
fixing another problem with seqres and ATOM mapping #106
 need to make sure the setup is called before every test, if run the first time, otherwise problems with seqres alignment #106
making sure we build a jar for this module