Add new CLI interface. Add new Chunk-Scatter -> T -> Gather model. Start adding file type Ids to be consistent with the task model.
Initial porting of the official 'Protocols' to the bindings model. Add utils via pbsmrtpipe.designer to help the manual creation of bindings.
Added new CLI tools used from Chunked Tasks, Scatter Task and Gather Tasks. Added simple util for file conversion. CLI tools are accessed via pbtools-*