cleanup + fix some align blocks
Merge pull request #16 from ohanar/align_cleanup

cleanup + fix some align blocks
remove the "powered by mathjax"/html5 logos

these look really bad in the epub, if we do want to
include something alone these lines, we should figure
out a different way to do it
add some basic metadata for the epub
Merge pull request #20 from ohanar/epub_metadata

add some basic metadata for the epub
Merge pull request #17 from ohanar/remove_eyesore

remove the "powered by mathjax"/html5 logos
Added stmd.js

For parsing/rendering common markdown. (Might want to include a
submodule to keep this up to date?)
Edited Makefile

Put all md files in build/html for use via ajax
misc small fixes/cleanup

- some permission fixes
- remove css.txt
- use a yaml list of subjects (i.e. keywords)
switch epub source to mathml

this might be a bit more limited in the long run,
however we are not using any tex functionality that
can't be done in mathml at the moment and by using
mathml we don't have to modify pandoc

in the future it should just be a few lines change to
switch back if need be
Merge pull request #22 from ohanar/epub

switch epub source to mathml
Changed heading level at top of syllabus
Makefile: HTML output is no longer standalone

Only the chunk we need for inserting into the webpage is generated.
Maybe standalong targets are good in the future?
Updated README.md

Added link to course site (hosted on GitHub via gh-pages).
Changed embedInScene for isosurfaces

Uses a callback to initialize scene, only after surface is constructed.
Makefile: added standalone html targets

Builds the content for insertion into gh-pages, and now also standalone
files.
Fix isosurface embedding

Fixed callbacks so that isosurface scene does not replace snapshot
until rendering is done.
Tweak pandoc.css

Eliminate horizontal lines except below `<h1>` and `<h2>` tags. Still
looks a bit yucky.
Update lecture 2

Include static images, eliminate unnecessary calls to `render`.
Update lecture 5

Eliminate unnecessary calls to `render`