Change command line options and convert DB path to an absolute path
Append null results to CSV for excluded samples
Changed permissions
Clarified command line options
Added updateDatabase method from old MetricExclusion.pm module
Added code to process duplicate metric; edited comments
Add implementation of remaining metrics: gender, identity, low/high maf het, magnitude, xydiff
Removed obsolete files; functionality is now in collate_qc_results.pl and Collation.pm
Deleted code related to CSV creation; now handled by Collation.pm
Remove obsolete CSV tests
First draft of collation tests
Export readQCMetricInputs function
Read input filenames from config file
Check JSON output against master copy
Added example QC outputs to test data, and moved maf/het output
Added qc_metrics master copy
Modify command line options and help text
Made compatible with revised command line arguments; tidied up for style
Added tests of command line script and DB sample exclusion
Split writeCsv into 3 smaller methods