draft implementation of --cts-bin and --cts-bin-breaks. not tested. also added a little more SNP ID checking to the --annot implementation
working --cts-bin and --cts-breaks. negative numbers set with N (ugly but '-' doesn't play nice with argparse)
added logging to --cts-bin
-- improved ldscore.py docstrings
-- added a working --l2-per-allele flag. still need to check the math
no message
gitignore update
added interpolate_cm.py
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bugfixes to interpolate_cm.py
changed --l2-per-allele to --per-allele and --scale-factor
changed --scale-factor to --pq-exp
added a pd.DataFrame.describe() to logs from LD Score estimation
added a correlation matrix printout at the end of LD Score estimation
switched --keep and --extract to match plink
small bug fix
small bug fix in --keep / --extract merge
small .M bugfix
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added --freq, switched --bin from reading .snp files to .bim files
small bug fix in --cts-bin