Merge pull request #3 from minillinim/master

Added presencre absence to buildTable.py
add LCA step to community_profile.py
half a bugfix
refactor BuildTable so it doesn't take config files as a parameter, possibly working community_profily.py
merge dparks into wwood's branch
Updated BWA classifier to support SILVA DB.
Added support for BIOM v2
Update to data files in classifyFastaWithNB.py
Merge remote-tracking branch 'official/master'
bugfix community_profile.py, add krona creating script
Merge pull request #4 from wwood/master

ben's changes
Proper handling on threads when extracting 16S.
Merge branch 'master' of github.com:dparks1134/CommunityM
doco fixup & change defaults: abs not rel
Merge pull request #5 from wwood/master

doco fixup & change defaults: abs not rel
Removed BIOM dependency
Merge branch 'master' of github.com:dparks1134/CommunityM

Conflicts:
	buildTable.py
Deprecated plotHeatmap.py
Fix to summarizeTableAtRank.py
Minor updates (v0.1.1)