TVB-1351 A first draft of the tractography importer; Add colors to tracts

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5986 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Fix warnings from build.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5992 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Move method to build Surface instance in the library pack.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@5995 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1358
Rework console_defaults and replace them with data-readers.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6001 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1358
Fix tests after recent changes in console-defaults.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6002 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1358
Rename the functions from the new reading mechanism (defaults.DConnectivity,  default.DRegionMapping, etc).

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6004 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1358
Improve names for reading default DataTypes.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6005 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1358
Review simulator.demos to use the new console-defaults.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6006 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1360 Generate default labels for generic time series. This allows spatial average time series to be viewed.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6008 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1358
Second iteration of console-defaults new implementation.
Move the read mechanism in the construvtor of the DataType, to be called when load_default arg is given.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6015 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1358
Revert previous wrong change.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6016 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1358
Revert incompatible RegionMapping change.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6018 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Update demos

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6022 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Connectivity: remove unused method to get an empty datatype

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6023 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Fix unit-test after recent change in Connectivity.generate_surrogate method

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6024 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Default datatset: rename default connectivity matrix (orginalmat file: nearest neighbour) to local connectivity surface reg 13

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6025 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Default datatset: rename default connectivity matrix (orginalmat file: nearest neighbour) to local connectivity surface reg 13

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6026 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1361 Removed duplicate equation computing logic: the ui_equation mechanism

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6027 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Add a default constructor to Connectivity


git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6028 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Update region tutorial with default


git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6029 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1