[PYOPENS] setup.py as minimal as possible

    moved codegeneration and moving of files needed for
    pyopenms distribution to new file create_cpp_extension.py

    setup.py is now as minimal as possible, which provides errors when
    using pip and its dependency resolution mechanism.
[PYOPENMS] only one build target for pyopenms

    building files for distribution + building extension "in place"
    in one step. this is faster than seperate builds, as the
    c++ compiler and linker are only called once
[PYOPENMS] refactored build targets for pyopenms
[PYOPENMS, CLEANUP] reformatted pyopenms.cmake
[PYOPENMS, FIX] fixed dependency decl in pyopenms.cmake
added MS experiment overview CV
externalised qcml stylesheet to XSL/
worked on tests for qcml
added some docu and exception handlling
[PYOPENMS] new strategy for naming pyopenms distributions

    + the name now combines open-ms version + timestamp of built
      of pyopenms.
      (this helps avoiding mistakes with intermediate versions of
      pyopenms)

    + minor cleanup

Conflicts:

	pyOpenMS/setup.py
[PYOPENMS,FIX] fixed regression from last commit e334d31
[PYOPENMS,CMAKE] running cmake removes pyOpenMS/build/ dir if exists

    When working on pyopenms existing shared libraries in pyOpenMS/build
    might be out of date, but the linker prefers these and possibly
    complains about "undefined symbols".
    This commit adapts pyopenms.cmake such that running "cmake" this
    build/ is removed in the OpenMS build tree if it exists.
[PYOPENMS,CMAKE] extended last commit 4d92e6
[PYOPENMS] added SpectrumAlignmentScore
[PYOPENMS] added support for SpectrumAlignment::getSpectrumAlignment
[PYOPENMS] fixed namespace of Residue::AIon et al

     moved ResidueType.AIon -> Residue.ResidueType.AIon
     same for all other members of enum Residue::ResidueType
[PYOPENMS] added inheritance from RangeManager to kernel types
[PYOPENMS] added missing inheritance in pxds/TheoreticalSpectrumGenerator.pxd

    added base class DefaultParamHandler and its methods
[PYOPENMS] added Support for definitions in KERNEL/StandardTypes.h
[PYOPENMS,FIX] corrected ns of classes in OpenMS::Interfaces

    pyopenms.Chromatogram    -> pyopenms.Interfaces.Chromatogram
    pyopenms.Spectrum        -> pyopenms.Interfaces.Spectrum
    pyopenms.BinaryDataArray -> pyopenms.Interfaces.BinaryDataArray