Allow contrib pkgs to override more than cppflags

Nothing's using this yet but it's a reasonable possibility for the
future.
Build fparser with per-METHOD flags

This should be helpful when debugging or profiling.
Propagate Make.common to exodus/nemesis/netcdf

Not sure why that hadn't already happened by my previous commit.
Merge pull request #310 from libMesh/fparser_flags

Fparser flags