Nothing at the moment, I think when I was debugging a while ago I was
printing those. I'll delete it


On Fri, Feb 7, 2014 at 2:41 PM, Robert McGibbon <notifications@github.com>wrote:

> In scripts/CalculateProjectSASA.py:
>
> >
> > -        for traj_ind in xrange(project.n_trajs):
> > -            traj_asa = []
> > -            logger.info("Working on Trajectory %d", traj_ind)
> > -            traj_fn = project.traj_filename(traj_ind)
> > -            chunk_ind = 0
> > -            for traj_chunk in md.iterload(traj_fn, atom_indices=atom_indices, chunk=1000):
> > -                traj_asa.extend(md.shrake_rupley(traj_chunk))
> > -                chunk_ind += 1
> > -            SASA[traj_ind, 0:project.traj_lengths[traj_ind]] = traj_asa
> > +        traj_fn = project.traj_filename(traj_ind)
> > +        chunk_ind = 0
> > +        for traj_chunk in md.iterload(traj_fn, chunk=1000):
> > +            traj_asa.extend(md.shrake_rupley(traj_chunk))
> > +            chunk_ind += 1
>
> What purpose does chunk_ind serve?
>
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