First commit of new Qualimap plotting scripts.
Readme typo
First commit of new script to plot SNP Effect Type Counts
Changed colour of snpEff plot
Added check that we have parsed some data from the input file
Added new GC distribution and Coverage % Reference plot scripts
Made the snpEff script plot both SNPs by type and by region.
Changed file naming for snpEff plots
Updated Readmes for new plots
Readme updates
Added legend to GC content plot
Added new functionality for Picard CollectGcBiasMetrics normalised coverage dual axis on the GC content plot
Merge pull request #13 from ewels/master

New scripts to plot Qualimap and snpEff results