Add cgpNgsQc to code base for artifact build and testing
Add expected final cgpNgsQc version to readme
Initial base code for new components added, commit to pull in deps on test host while continuing with dev
Rearranged so that ascat result is present for tumour contamination processing, and remainder of new analysis is up first (mainly for testing speed)
Removed unneeded list
Moved some items and linked deps.
quoted memory param instead of actual value
Fixed missing space in command construction
Correct file naming to match raw file names
Assume this is leftover from old test file handling
Normal contamination needs to be stored outside of possible range for tumour count
Extensions for new QC related elements
This appears to be functional now.
Working on mem settings for AWS
Added changelog file, updating release number in pom/properties
Merge branch 'dev' into feature/brian_tuning_mem

Conflicts:
	pom.xml
	workflow.properties
Adding mem profiles for two types of AWS boxes
Adding third profile
Including paths for pem files too
Adding the latest list, adding dkfz key settings