Direct ionization code added
redid Makefile change - new LIB locations
Corrected Makefile to include direct_ion.c as in NSHs change
made prototypes
Added doppler shift line in resonate.c where it should be; see #117 and #39
First commit of new dev structure
Corrected makefile and moved some scripts
Corrected .travis.yml
Corrected Makefile
Another makefile edit to work with travis build check
Quick edit of travis yml and README
Another travis yml tweak
travis yml, correct cd path
Removed install.txt- install information is in README.md
README edit
Merge pull request #119 from jhmatthews/dev

Changing dev to contain the whole structure, minus data
Merge branch 'advanced_mode' of https://github.com/jhmatthews/python into dev
Implemented a first attempt at an advanced mode accessed with -d flag