Fixed handling of CFLAGS for specifying platform specific options.

Now use AM_CFLAGS so we don't override user options.

    * Makefile.in: Regenerated
    * analysis/Makefile.in: Regenerated
    * configure: Regenerated
    * configure.ac: Changed substitutions for CFLAGS to AM_CFLAGS
    * src/2dfir/Makefile.in: Regenerated
    * src/adpcm/Makefile.in: Regenerated
    * src/blowfish/Makefile.in: Regenerated
    * src/bs/Makefile.in: Regenerated
    * src/bubblesort/Makefile.in: Regenerated
    * src/cnt/Makefile.in: Regenerated
    * src/common.mk.am: Append to AM_CFLAGS instead of set
    * src/compress/Makefile.in: Regenerated
    * src/crc32/Makefile.in: Regenerated
    * src/cubic/Makefile.in: Regenerated
    * src/dijkstra/Makefile.in: Regenerated
    * src/duff/Makefile.in: Regenerated
    * src/edn/Makefile.in: Regenerated
    * src/fasta/Makefile.in: Regenerated
    * src/fdct/Makefile.in: Regenerated
    * src/fft/Makefile.in: Regenerated
    * src/float_matmult/Makefile.in: Regenerated
    * src/gdb-advance/Makefile.in: Regenerated
    * src/gdb-all-types/Makefile.in: Regenerated
    * src/gdb-anon/Makefile.in: Regenerated
    * src/gdb-arrayidx/Makefile.in: Regenerated
    * src/gdb-async/Makefile.in: Regenerated
    * src/int_matmult/Makefile.in: Regenerated
    * src/lms/Makefile.in: Regenerated
    * src/nbody/Makefile.in: Regenerated
    * src/platformcode/Makefile.in: Regenerated
    * src/rijndael/Makefile.in: Regenerated
    * src/sha/Makefile.in: Regenerated
    * src/template/Makefile.in: Regenerated
Made make rules silent by default

    * Makefile.in: Regenerated
    * aclocal.m4: Regenerated
    * analysis/Makefile.in: Regenerated
    * configure: Regenerated
    * configure.ac: Made make rules silent by default
    * src/2dfir/Makefile.in: Regenerated
    * src/adpcm/Makefile.in: Regenerated
    * src/blowfish/Makefile.in: Regenerated
    * src/bs/Makefile.in: Regenerated
    * src/bubblesort/Makefile.in: Regenerated
    * src/cnt/Makefile.in: Regenerated
    * src/compress/Makefile.in: Regenerated
    * src/crc32/Makefile.in: Regenerated
    * src/cubic/Makefile.in: Regenerated
    * src/dijkstra/Makefile.in: Regenerated
    * src/duff/Makefile.in: Regenerated
    * src/edn/Makefile.in: Regenerated
    * src/fasta/Makefile.in: Regenerated
    * src/fdct/Makefile.in: Regenerated
    * src/fft/Makefile.in: Regenerated
    * src/float_matmult/Makefile.in: Regenerated
    * src/gdb-advance/Makefile.in: Regenerated
    * src/gdb-all-types/Makefile.in: Regenerated
    * src/gdb-anon/Makefile.in: Regenerated
    * src/gdb-arrayidx/Makefile.in: Regenerated
    * src/gdb-async/Makefile.in: Regenerated
    * src/int_matmult/Makefile.in: Regenerated
    * src/lms/Makefile.in: Regenerated
    * src/nbody/Makefile.in: Regenerated
    * src/platformcode/Makefile.in: Regenerated
    * src/rijndael/Makefile.in: Regenerated
    * src/sha/Makefile.in: Regenerated
    * src/template/Makefile.in: Regenerated
Fix for stm32f0discovery platform.

CFLAGS and LDFLAGS need to be set to include the correct libraries, and
specify the processor, however the previous commit to move them into
AM_CFLAGS meant the configure tests failed.

    * configure: Regenerated
    * configure.ac: Assign to CFLAGS and LDFLAGS, restoring after tests
        are performed
Added platform support for stm32vldiscovery

    * Makefile.in: Regenerated
    * configure: Regenerated
    * configure.ac: Added --with-platform option for stm32vldiscovery
    * src/2dfir/Makefile.in: Regenerated
    * src/adpcm/Makefile.in: Regenerated
    * src/blowfish/Makefile.in: Regenerated
    * src/bs/Makefile.in: Regenerated
    * src/bubblesort/Makefile.in: Regenerated
    * src/cnt/Makefile.in: Regenerated
    * src/common.mk.am: Include linker script for stm32vldiscovery
    * src/compress/Makefile.in: Regenerated
    * src/crc32/Makefile.in: Regenerated
    * src/cubic/Makefile.in: Regenerated
    * src/dijkstra/Makefile.in: Regenerated
    * src/duff/Makefile.in: Regenerated
    * src/edn/Makefile.in: Regenerated
    * src/fasta/Makefile.in: Regenerated
    * src/fdct/Makefile.in: Regenerated
    * src/fft/Makefile.in: Regenerated
    * src/float_matmult/Makefile.in: Regenerated
    * src/gdb-advance/Makefile.in: Regenerated
    * src/gdb-all-types/Makefile.in: Regenerated
    * src/gdb-anon/Makefile.in: Regenerated
    * src/gdb-arrayidx/Makefile.in: Regenerated
    * src/gdb-async/Makefile.in: Regenerated
    * src/int_matmult/Makefile.in: Regenerated
    * src/lms/Makefile.in: Regenerated
    * src/nbody/Makefile.in: Regenerated
    * src/platformcode/stm32vl_flash.ld: Store everything in flash, and
        copy to memory at runtime
    * src/rijndael/Makefile.in: Regenerated
    * src/sha/Makefile.in: Regenerated
    * src/template/Makefile.in: Regenerated
Regenerate configure and makefile

    * Makefile.in: Regenerated
    * configure: Regenerated
Added initial code for sam4lxplained platform.

    * configure.ac: Added code for sam4lxplained platform
Merge branch 'jp' into sam4lxplained

Conflicts:
	ChangeLog
Added linker script for sam4lxplained board.

    * Makefile.in: Regenerated
    * aclocal.m4: Regenerated
    * analysis/Makefile.in: Regenerated
    * configure: Regenerated
    * configure.ac: Small fixes to mimic changes to other Cortex
        platforms (saving CFLAGS and LDFLAGS)
    * src/2dfir/Makefile.in: Regenerated
    * src/adpcm/Makefile.in: Regenerated
    * src/blowfish/Makefile.in: Regenerated
    * src/bs/Makefile.in: Regenerated
    * src/bubblesort/Makefile.in: Regenerated
    * src/cnt/Makefile.in: Regenerated
    * src/common.mk.am: Added in linkerscript
    * src/compress/Makefile.in: Regenerated
    * src/crc32/Makefile.in: Regenerated
    * src/cubic/Makefile.in: Regenerated
    * src/dijkstra/Makefile.in: Regenerated
    * src/duff/Makefile.in: Regenerated
    * src/edn/Makefile.in: Regenerated
    * src/fasta/Makefile.in: Regenerated
    * src/fdct/Makefile.in: Regenerated
    * src/fft/Makefile.in: Regenerated
    * src/float_matmult/Makefile.in: Regenerated
    * src/gdb-advance/Makefile.in: Regenerated
    * src/gdb-all-types/Makefile.in: Regenerated
    * src/gdb-anon/Makefile.in: Regenerated
    * src/gdb-arrayidx/Makefile.in: Regenerated
    * src/gdb-async/Makefile.in: Regenerated
    * src/int_matmult/Makefile.in: Regenerated
    * src/lms/Makefile.in: Regenerated
    * src/nbody/Makefile.in: Regenerated
    * src/platformcode/Makefile.in: Regenerated
    * src/platformcode/sam4lxplained.ld: Linkerscript for the
        sam4lxplained platform
    * src/rijndael/Makefile.in: Regenerated
    * src/sha/Makefile.in: Regenerated
    * src/template/Makefile.in: Regenerated
Added GPIO pin toggling for sam4lxplained board

    * src/platformcode/platformcode.c: Added GPIO pin toggling for
        sam4lxplained board
Set the clock properly on the sam4lxplained platform

    * src/platformcode/platformcode.c: Set the start OSC0 and set as
        main clock source
Added pic32mx250f128b to --with-platform

    * configure.ac: Added pic32mx250f128b to --with-platform
Measurement can now be taken on PIC32MX250F128B platform.

    * configure.ac: Added LDFLAGS definition to wrap main
    * src/common.mk.am: Added linkerscript
    * src/platformcode/pic32mx.ld: Linkerscript for the pic32mx
    * src/platformcode/pic32mx_startup.s: Added code to jump to the
        reset vector in the pic boot memory
    * src/platformcode/platformcode.c: Toggle PA4, as well as a wrapper
        around main, so that exit is called, instead of main being
        repeated.
Add xmega-a3bu Xplained target

	* configure: Regenerate
	* configure.ac: Add ATXMEGA256A3BUXPLD platform
	* src/platformcode/platformcode.c: Add trigger
Merge remote-tracking branch 'origin/atxmega256a3buxpld' into jp

Conflicts:
	ChangeLog
	configure
	configure.ac
Changed the name of the xmega platform.

From the chip name to the development board's name. Platform was
atxmega256a3buxpld, is now xmegaa3buxplained.

    * configure: Regenerated
    * configure.ac: Changed the name of the xmega platform from the chip
        name to the development board's name. Platform was
        atxmega256a3buxpld, is now xmegaa3buxplained.
Merge branch 'pic32mx250f128b' into jp

Conflicts:
	ChangeLog
	configure.ac
Merge branch 'sam4lxplained' into jp

Conflicts:
	ChangeLog
	configure
	src/platformcode/platformcode.c
Merge branch 'planglois' into beebsv2

Conflicts:
	ChangeLog
Sorted the benchmark autotools configuration lines

    * Makefile.am: Sorted the benchmark subdirs
    * Makefile.in: Regenerated
    * configure: Regenerated
    * configure.ac: Sorted the benchmark config files
Added bsort100 benchmark

    * Makefile.am: Added bsort100 benchmark
    * configure.ac: Added bsort100 benchmark
    * src/bsort100/Makefile.am: Added bsort100 benchmark
    * src/bsort100/Makefile.in: Regenerated
    * src/bsort100/bsort100.c: Added bsort100 benchmark