Merge branch 'release-1.5.9'
Updated MANIFEST
Merge branch 'release-1.5.10'
Merge branch 'release-1.5.11'
Added HumanMethylation450v1 chip.
Merge branch 'release-1.5.11'
Merge pull request #274 from iainrb/devel

Refactoring of VCF converter
Merge pull request #276 from iainrb/devel

Correctly process Invalid field in Fluidigm; improved logging
Merge pull request #277 from iainrb/devel

Handling of Fluidigm control samples in VCF conversion
Refactored SQL in the Infinium database wrapper to handle rescans more
effectively. Also removes some SQL redundancy and reduces the number
of queries to the LIMS.

The LIMs wrapper now returns mapped NFS paths for files, so that the
path munging happens in one place only.

Fixed some documentation typos.
Merge pull request #278 from keithj/devel

Refactored SQL in the Infinium database wrapper to handle rescans
Merge pull request #279 from iainrb/devel

Split into separate scripts for VCF conversion and consistency check
Added an extra NFS path transformation for old data in LIMS.
Merge pull request #280 from keithj/devel

Added an extra NFS path transformation for old data in LIMS.
Use the -K option for iput
Merge pull request #281 from keithj/devel

Use the -K option for iput
Merge pull request #282 from iainrb/devel

Get rid of script chatter in tests
Merge pull request #283 from iainrb/devel

Bugfix: Enable access to read-only SQLite DB
Merge pull request #284 from wtsi-npg/release-1.5.12

Release 1.5.12
Merge pull request #43 from wtsi-npg/master

Merge changes to release 1.5.12