Began rewriting C/Fortran wrapper generation to use Doxygen/Python instead of gccxml/XSLT
Continuing to reimplement wrapper generation
Merge branch 'master' of https://github.com/peastman/openmm into wrappers
Finished C wrapper generation
Implemented generating Fortran wrapper header
Finished wrappers for main library
Fixed bugs in computing PME energy with CPU platform
Merge pull request #221 from peastman/master

Fixed bugs in computing PME energy with CPU platform
Bug fixes to wrapper generation.  Implemented wrappers for AMOEBA.
Removed files related to the old wrapper generators
Include serialization classes directly in main library
Optimization to building neighbor list on CPU platform
Merge pull request #222 from peastman/master

Optimization to building neighbor list on CPU platform
Optimizations to CPU nonbonded forces: better load balancing between threads, use linear splines instead of cubic
Merge pull request #223 from peastman/master

Optimizations to CPU nonbonded forces: better load balancing between threads, use linear splines instead of cubic
Created C/Fortran wrappers for serialization
Enforce memory alignment to improve performance of vector operations.  Also fixed bugs in an earlier optimization.
Merge pull request #224 from peastman/master

Enforce memory alignment to improve performance of vector operations.  Also fixed bugs in an earlier optimization.
More fixes for problems on OS X 10.9
Merge pull request #225 from peastman/master

More fixes for problems on OS X 10.9