Version: 0.5.0 [2014-05-26]
o Major changes in the interface of the main functions 'PSSeg' and
'jointseg'.
o Now 'doGFLars' is a wrapper calling the lower-level 'segmentByGFLars'.
o Now 'doRBS' is a wrapper calling the lower-level 'segmentByRBS'.
o Added 'binMissingValues' so that it may be used not only for GFLars.
o Cleaned up documentation and examples.



git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@89 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Forgotten files


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@90 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Forgotten help files


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@91 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
o Changed Illumina to GSE11976 and Affymetrix to GSE29172 
o Bug fixed for PSCBS, DynamicProgramming and CBS methods.
o Updated scripts


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@92 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
vignette moved from Sweave to knitr


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@93 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Changed platform to dataSet in "loadCnRegionData" function


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@94 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Updates to doc and to I/O PSSseg -> jointseg -> doNnn


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@95 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
bug fixed in doCBS and doPelt


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@96 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Now 'Yseg' jointSeg can be a vector.


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@97 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
add doPelt vignette


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@98 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
added biblio dopelt vignette



git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@99 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Version: 0.5.2 [2014-05-30]
o Added a vignette to illustrate how to add a new method.



git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@100 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
update scripts 


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@101 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Updated to vignette


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@102 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Now ASCAT scripts are downloaded directly from http://heim.ifi.uio.no/bioinf/Projects/ASCAT/ASCAT2.1.zip


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@103 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Renaming


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@104 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Version: 0.2.1 [2014-05-30]
o Moved inst/testScripts/system/preprocessing to inst/preprocessing.



git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@105 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Version: 0.5.4 [2014-06-06]
o Replaced 'jointSeg' by 'jointseg' in 'inst' scripts.

Version: 0.5.3 [2014-06-04]
o Some changes to the main vignette (now using 'knitr').
o Updates in scripts to perform ASCAT segmentation.



git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@106 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Updated to doc.


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@107 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
minor update in doc


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/jointseg@108 edb9625f-4e0d-4859-8d74-9fd3b1da38cb