I have added all the constants and equations used by Hannah's model to describe the Glutamate-Calcium-EET process.
The program is very slow, so I think there is a mistake somewhere. Plot_test and plot_test2 contain easy plots to check the results.
Not all initial conditions used by Hannah were found, 3 out of 5 are estimated.
There is not yet a link between calcium/EET and the BK channel. (Only membrane voltage dependant)
The effect of glutamate on IP3 production is incorporated. (Rho function in getRef)
The slow speed of the program is fixed (takes 4 minutes instead of 40).
BK channel opening depends on membrane voltage and EET & Calcium concentrations.
The test_plot files are only used to create fast overviews.
A global parameter has been introduced do determine which NVU version is used. (With or without de EET/Ca2+ pathways)
In plot all corrections were made to account for the changed matrix size of the output DATA file.
Documentation for NVU 1.1 is added
Changes were made to the code to adapt for the corrections by Loes&Evert.
Final documentation files needed for NVU 1.1
New file to create all plots
Corrected Minor Compilation Errors

There are a few duplicate labels in the *.tex files as indicated by the compilation warnings.
The git environment was cleaned up. (Unused files were removed, other files were reorganized.
The double labels in the documentation are removed
Update the README.md File with TODO Action Points

Need to provide the most basic top-level documentation about the code
and terms of use (licensing, citations).
Move *.m files to Figures Directory

Still need to be mentioned in the README.md file.
Included some commentary in the read me file
Changed some mistakes in the documentation.
DOC: Minor Updates, Removed Some Duplicate Files

Changed main file name, to produce a better named PDF, updated document title, changed bibliography style to standard style provided by natbib.
Kathy's suggestion for the documentation were implemented
Merge branch 'neuronCoupling' of https://github.com/BlueFern/envy-you into neuronCoupling

Conflicts:
	doc/main.pdf
README.md Edit

Updated the first section. Other sections still need attention.
Merge branch 'neuronCoupling' of https://github.com/BlueFern/envy-you into neuronCoupling
Corrections were made to the documentation.