output of novel_sj_from_intersect_annot_segesplit() is now a BEED6 of the splice junctions ONLY (no windows are written to the output
updated Changes for 0.02
updated function names
updated POD; code cleanup
added ss_isCanonical() subroutine; adjusted BED-processing subroutines to process regerence genome input
updated POD
major code refactoring
use Carp for error handling; updated Changes
updated POD
updated POD
lib/ViennaNGS/SpliceJunc.pm
README
added test for bedtools
use IPC::Cmd to run external tools; use Path::Class to construct paths; code and documentation cleanup
release 0.02
t/ViennaNGS-SpliceJunc.t
release v0.02