changed project structure for setuptools support
fixed bug related to relative paths from the home directory
Merge branch 'feature/setuptools' into develop

Conflicts:
	.gitignore
fixed version number
changed how args worked
Fixed some bugs and optimized a few tings, kind of
Merge branch 'feature/commandline_commands' into develop
added a simple help message
Removed dev from tags in preperation for release
Fixed bug where help appears for all commands
fixed help error... again