Initial commit
Initial commit for fbaServices code.
Update tt for start_service and processesw
Update BaseObject function name
Added Bio::KBase::Exceptions which is required to start the service
Added new commands, cleaned up existing commands, and developed new script structure to greatly simplify scripts by placing overlapping code into functions.
Merge branch 'master' of https://github.com/ModelSEED/KBaseFBAModeling into NewCommandStructure

Conflicts:
	lib/fbaModelServicesImpl.pm
Adding ability to connect server to a file db to enable testing.
Fixing bug in new gapgen function
Fixing command line scripts for IRIS to use fbaModelServicesScriptSupport
Two new functions added to support new simphenotypes script
Change server to use optional config file for mongodb host
Move clients into lib dir, as Makefile expects

- This is also the expected layout for modules.
Add lib/perl5 to Makefile template
Fix Makefile, chmod -x spec file
Merge branch 'master' of github.com:ModelSEED/KBaseFBAModeling
Update README
Update README
Fix README
Update README.md