smarten up option parsing for trankRanking and add option for starting tracks
make transition matrix epsilon values an option that is off by default in hmm, but activated by teHmmTrain when fully connected totally unsuipervised model is detected
add smarter segmenting options and randrange option
lower trehshold for validate
fix recent typo
fix really annoying bug where weighted interval was getting parsed instead of interval
output baseline stats when starTracks option used
fix copypasto in transition seglength correction.  note that it looks like the training component is still wrong.
add repbase track
fix typos