Created 'included data' script for iupac codes and transition matricies
Added dolph. genetic data for examples.
Fixed data documentation
Removed deprecated S3Method directives
changed ti/tv matrices from logical to a single character matrix
move data folder from package folder to devel folder
fixed theta.h calculation for haploid gtypes
fixed tajimas.d calculation for haploid gtypes
combined calc.num.missing and calc.prop.missing into one function
added msat examples to all above
changed all Depends to Imports and added importFrom for mclapply to roxygen tags
changed summarize.loci to remove calc.prop.missing, but create equivalent function within summarize.loci using calc.num.missing