Use the snvs.hq.tier1.v1.annotated.top file if snvs.hq.tier1.v1.annotated.top.header doesn't exist
bed reporter needs to write .bed file for igv xml to work
Merge pull request #311 from susannasiebert/variant_reporting_igv

Bed report needs to write .bed file for igv xml to work
Updated `genome` tab completion.
Updated `gmt` tab completion.
Merge pull request #310 from susannasiebert/epitope_prediction

Use alternate snvs file if snvs.hq.tier1.v1.annotated.top.header doesn't exist