Fixed bug with multiple inline highlights.
Removed the Meta persistence outside of reports.
Added comments to main engine classes.
Merge pull request #35 from lincolnthree/master

JBossify the POM
Merge branch 'master' of https://github.com/windup/windup
Runs tattletale.
Add XML hint for <delay-updates-until-end-of-tx> in weblogic-ejb.jar.
Replace with <sync-on-commit> in jbosscmp-jdbc.xml
Refactoring to remove reporting functionality from main engine.
Updated to refactor functionality out of the WindupEngine.
Moved logic into the ReportEngine from the WindupEngine.
Removed the indexed Classpath, since this was causing issues in loading the rules folder.
Fixed issue https://github.com/windup/windup/issues/15
Added support for Websphere MQ and Oracle JMS to JEE standards.
Added rules for IBM MQ Migrations to JEE.
Added in JDK 1-7 deprecations.
Fixed bug in the regex for []
Moved JBoss rules.
engine needs a dependency on the rules since it attempts to load
"jboss-windup-context.xml". Resolves issue #37
Merge pull request #38 from itewk/master

Resolves issue #37
Added "provided" scope for the Windup Rules.

This will allow windup developers to determine how the rules make it onto their classpath.