define github repo, at --set-upstream for deploy_gh_pages
be more specific to specify github upstream branches
add another git pull command because why not
restore original sphinx_deployment.mk commands
set git config to push to the matching branch
add git config to pull to the matching repo
add more verbose debugging to docs deployment
remove "@" symbols fom makefile, change --set-upstream (deprecated) --> --track
remove -d (verbose debugging) from makefile
fix git branching, remove DEPLOY_HTML_DIR
spaces --> tabs for Makefile indentation
remove _build dir
add _build to gitignore
change theme to paper
add toctree to index
add space in toctree command
remove copied README
only deploy docs on master branch
edit flotilla description, only deploy docs on master
Merge branch 'dev' of github.com:YeoLab/flotilla into dev

* 'dev' of github.com:YeoLab/flotilla:
  can work with data that has no pooled samples