Print Usage if unknown option given
Fix verbose messages
Default to verbose mode; Use --silent to turn off
Skip regions where reference base is unknown
Avoid INDELs
Clean up
Permit restriction sites adjacent to inserts
Bypass regions w/ unknown reference bases earlier in sub
Consider inserts when allowing multi-cut markers
Define is_multi_cut sub
Exclude inserts when running primer3
Use single hash instead of two arrays for excluded positions
Avoid inserts during virtual digestion
Add TODO and clean up
Merge branch 'feature/avoid-indels' into develop
Update version #
Merge branch 'release/0.5.0' into develop