R: rename deprecate.R to make sure it comes at the end
R: make sure all old names are still exported
R: fix a renaming typo
R: avoid explicit init call when loading package R calls the init function automatically, if it is named properly. We need this to make roxygen avoid compiling the package.
R: do not compile the package for building it, towards #721 Need to trick devtools/roxygen and temporarily remove src/ from the package.
R: generate NAMESPACE by roxygen, #721
R: use DESCRIPTION generated by roxygen
R: clean up exported S3 functions
R: rename graph.famous to make_graph, #717
R: NAMESPACE is not created by stimulus any more
R: remanining graph.famous -> make_graph transition, #717
R: rename graphNEL conversion functions, #714
R: rename options api, #712
R: rename graph.intersection to intersection, #713
R: merge similarity functions, #706
R: fix \preformatted errors, #724 This is a bug in Rd2roxygen, actually.
R: fix a similariy typo, #706
R: need to export old name graph.intersection, #713
R: exportPajek -> export_pajek, #703
R: get.diameter -> get_diameter, #704