Update from Bill Martin Sep. 2012: Updated gnest arguments to match filenames in the example
Update from Bill Martin Sep. 2012: New environment variable GNEST_DB_HOST (for Galaxy)
Update from Bill Martin Sep. 2012:
1. Added a new option, "allow_overlapping_genes", which directs
gnest to skip the filtering step in which only one gene is retained
when multiple gene annotations overlap.
2. Fixed overlapping genes filter.
3. Allow a mix of non-integer and integer expression data.
Update from Danielle Lemay Oct. 2012: Example XML tool definition file for incorporating G-NEST into Galaxy.
Update from Bill Martin Sep. 2012: adding cpan_list and pkg_list.
Merge pull request #1 from AngieHinrichs/master

Update from... 2012!