Modify min_cal_score filter to RNA SA mapper
Fixes one bug in filter by intron size parameters, filter reads by score in BWT mode
Insert installation line of dependencies in Readme file
Merge branch 'develop'
Improves commad-line management
Fixes bug when generating SA index for large genomes
Merge branch 'develop'
Fixed warnings in some printfs
[BAM]Implement: Added empirical qualities to recalibration statistics
[BAM]Implement: Recalibration statistics info now contains reported quality versus empirical quality data
[BAM]Implement: Quality - cycle accuracy output