Fix issue 34 (SFTPFile prefetch assumes response order matches requests)

SFTPFile._async_response gets a new 'num' parameter giving the request
number.  This can be matched up with the return value of
SFTPClient._async_request() to retrieve data specific to that request.

The prefetch queue SFTPFile._prefetch_reads is replaced with the dict
_prefetch_extents, which maps request numbers to (offset,length)
tuples.

A lock is used to exclude the case where a response arrives in
_async_response before _prefetch_thread has updated it.
Introduce ECDSA

This just adds tests; hooking this up with paramiko comes in the next
commit.
Hook up ECDSA to hostkeys

More sophisticated key negotiation is still necessary in the case
where we have an ECDSA key for the server and it offers us both RSA
and ECDSA. In this case, we will pick RSA and fail because we don't
have it. Instead, we should pick ECDSA. Still, this works if you tell
your server to only offer ECDSA keys :)
transport: Wait for thread termination before closing the socket

Make sure the Thread.run() method has terminated before closing the
socket. Currently, the socket is closed through Packetizer.close(),
which happens too early. Move the socket.close() into Transport.close()
and after the Thread.join() call.

While at it, modify the stop_thread() method and use it in
Transport.close() to avoid code duplication. Use join() with a timeout
to make it possible to terminate the main thread with KeyboardInterrupt.
Also, remove the now obsolete socket.close() from Transport.atfork().

This fixes a potential infinite loop if paramiko.SSHClient is connected
through a paramiko.Channel instead of a regular socket (tunneling).

Details:

Using a debug patch to dump the current stack of the thread every
couple of seconds while trying to close it, I've seen the following
over and over again:

Thread could not be stopped, still running.
Current traceback (most recent call last):
  File "/usr/lib/python2.7/threading.py", line 524, in __bootstrap
    self.__bootstrap_inner()
  File "/usr/lib/python2.7/threading.py", line 551, in __bootstrap_inner
    self.run()
  File ".../paramiko/transport.py", line 1564, in run
    self._channel_handler_table[ptype](chan, m)
  File ".../paramiko/channel.py", line 1102, in _handle_close
    self.transport._send_user_message(m)
  File ".../paramiko/transport.py", line 1418, in _send_user_message
    self._send_message(data)
  File ".../paramiko/transport.py", line 1398, in _send_message
    self.packetizer.send_message(data)
  File ".../paramiko/packet.py", line 319, in send_message
    self.write_all(out)
  File ".../paramiko/packet.py", line 248, in write_all
    n = self.__socket.send(out)
  File ".../paramiko/channel.py", line 732, in send
    self.lock.release()

The thread was running Packetizer.write_all() in an endless loop:

while len(out) > 0:
    ...
    n = Channel.send(out) # n == 0 because channel got closed
    ...
    out = out[n:]         # essentially out = out

Signed-off-by: Frank Arnold <farnold@amazon.com>
un-break Python 2.5 compatibility by using isAlive() instead of is_alive()

Python's documentation has a bug[1], in that it doesn't correctly annotate
is_alive as being a function introduced in Python 2.6.

[1] http://bugs.python.org/issue15126

Signed-off-by: Steven Noonan <snoonan@amazon.com>
Add NEWS entry
Fix #179 - missing host variable in fqdn evaluation
Changelog re #179
Merge branch '1.10' into 1.11

Conflicts:
	NEWS
Merge branch '1.11'
Merge branch '1.11' into 156-int
Changelog re #156, closes #156
Merge branch '1.11'
Bump version for dev
Merge branch '152-int' into 152-real-int

Conflicts:
	paramiko/hostkeys.py
	requirements.txt
Shuffle changelog entry around.
Add attribution to changelog
Use verbose test output for travis
Merge branch '1.8' into 1.9
Merge branch '1.9' into 1.10