Added "subpackages" parameter to make javadoc process subpackages correctly.
add jython version of traveling salesman
Fix bogus returns when dealing with multiple discrete outputs

When looking for largest activating output, code was incorrect.
Merge pull request #16 from jenleong/master

Added "subpackages" parameter to make javadoc process subpackages correc...
Merge pull request #17 from scivm/master

add jython version of traveling salesman
Merge pull request #18 from mongi3/master

Fix bogus returns when dealing with multiple discrete outputs
pulling in merges from pushkar
This works well now
runs in multiple processes. Slow, but generates interesting results.
moving init.m to be in my dir.
saving 2nd run script status
fixed bugs in matlabwriter
refactored votetest to return number of iters rather than run for a specified time.