Change centWave to use wavelet scale with highest CWT coefficient to determine peak width, and scale with highest fixed-window integration area to determine RT center.
Change centWave to use wavelet scale with highest CWT coefficient to determine peak width, and scale with highest fixed-window integration area to determine RT center.
Merge branch 'centWave-pick-scale-by-coef' of github.com:benjiec/xcms into centWave-pick-scale-by-coef
Change centWave to use wavelet scale with highest CWT coefficient to determine peak width, and scale with highest fixed-window integration area to determine RT center.
Merge branch 'centWave-pick-scale-by-coef' of github.com:benjiec/xcms into centWave-pick-scale-by-coef
Change centWave to use wavelet scale with highest CWT coefficient to determine peak width, and scale with highest fixed-window integration area to determine RT center.
Merge branch 'centWave-pick-scale-by-coef' of github.com:benjiec/xcms into centWave-pick-scale-by-coef
Change centWave to use wavelet scale with highest CWT coefficient to determine peak width, and scale with highest fixed-window integration area to determine RT center.
Merge branch 'centWave-pick-scale-by-coef' of github.com:benjiec/xcms into centWave-pick-scale-by-coef
Change centWave to use wavelet scale with highest CWT coefficient to determine peak width, and scale with highest fixed-window integration area to determine RT center.
version bump
Merge branch 'centWave-pick-scale-by-coef' of github.com:benjiec/xcms into centWave-pick-scale-by-coef
handle when dimension of CWT coefficient matrix does not match list of scales, not sure when this happens in real life but it happens for a test case
further narrow down RT range by skipping regions less than 1% of max intensity
version bump
added a description of changes
using best scale by CWT coefficient to pick both center to descend and RT center, was using best scale by fixed width integration to pick the RT center before; also, on descending with integration method 1, go at least 80% of the peak width predicted by the best scale -- otherwise spikes in the peak can pre-maturely terminate descending. we are counting on CWT to get us the best scale anyways.