fix: topup when out_base is a path
Merge remote-tracking branch 'upstream/master' into fix/topup

* upstream/master: (82 commits)
  tiny typo
  another attempt at fixing bash conditionals
  fixed bash conditionals
  added no dep install version. we'll be testing on both.
  Added xor option in Camino connectivity for robustness
  Conmat test function
  Added more connectivity matrix options in Camino interface
  Fixed tests.
  remove deb packages installation
  added apt caching
  fix: d3 change.
  switched to six.string_types for string type checks
  added external package: 'six'
  Mention AddNoise in the changelog
  Remove d3.min.js dependency
  Log cleanup
  Fixed tests
  Update README.rst
  Update links_names.txt
  Update index.rst
  ...
Merge pull request #928 from satra/fix/topup

fix: topup when out_base is a path