merge dev_5_0 -D org: PR 2596 (Groups users menu 12082)
merge dev_5_0 -D org: PR 2615 (Sphinx api improvements)
merge dev_5_0 -D org: PR 2667 (Add a quiet option to CLI commands)
merge dev_5_0 -D org: PR 2676 (Overhaul of Insight's Search, Part 2)
merge dev_5_0 -D org: PR 2681 (12252 script limit)
merge dev_5_0 -D org: PR 2693 (Mousewheel zoom centres on mouse location)
merge dev_5_0 -D org: PR 2726 (Preview fix)
merge dev_5_0 -D org: PR 2741 (add trivial checksum algorithm that reflects file size only)
merge dev_5_0 -D org: PR 2743 (`fs rename` command for modifying template values)
merge dev_5_0 -D org: PR 2759 (Update dev_5_0 submodules)
merge dev_5_0 -D org: PR 2769 (Auto close)
merge dev_5_0 -D org: PR 2775 (Permissions Test Matlab : Whole Suite)
merge dev_5_0 -D org: PR 2783 (Use a global HDF5 lock (trac: 10464) (rebased onto dev_5_0))
merge dev_5_0 -D org: PR 2785 (Initial Dockerfile for OMERO)
merge dev_5_0 -D org: PR 2786 (Pytest markers registration)
merge dev_5_0 -D org: PR 2789 (Allow foregrounding of the server process (see #12281).)
merge dev_5_0 -D org: PR 2793 (Matlab CZI job)
merge dev_5_0 -D org

Repository: openmicroscopy/openmicroscopy
Excluded PRs:
  # PR 2784 dominikl 'Added new method 'byLuceneQueryBuilder' to search service' (label: exclude)
  # PR 2777 joshmoore 'Add `upload_rm` file transfer option' (label: exclude)
  # PR 2653 joshmoore 'Server unit tests' (status: failure)
  # PR 2228 jburel 'Connection scifio' (label: exclude)
  # PR 2108 rleigh-dundee 'release-src includes bioformats version metadata' (label: exclude)
Already up-to-date.

Merged PRs:
  # PR 2596 will-moore 'Groups users menu 12082'
  # PR 2615 sbesson 'Sphinx api improvements'
  # PR 2667 sbesson 'Add a quiet option to CLI commands'
  # PR 2676 dominikl 'Overhaul of Insight's Search, Part 2'
  # PR 2681 joshmoore '12252 script limit'
  # PR 2693 will-moore 'Mousewheel zoom centres on mouse location'
  # PR 2726 jburel 'Preview fix'
  # PR 2741 mtbc 'add trivial checksum algorithm that reflects file size only'
  # PR 2743 joshmoore '`fs rename` command for modifying template values'
  # PR 2759 snoopycrimecop 'Update dev_5_0 submodules'
  # PR 2769 joshmoore 'Auto close'
  # PR 2775 bramalingam 'Permissions Test Matlab : Whole Suite'
  # PR 2783 manics 'Use a global HDF5 lock (trac: 10464) (rebased onto dev_5_0)'
  # PR 2785 joshmoore 'Initial Dockerfile for OMERO'
  # PR 2786 sbesson 'Pytest markers registration'
  # PR 2789 bpindelski 'Allow foregrounding of the server process (see #12281).'
  # PR 2793 sbesson 'Matlab CZI job'
Repository: openmicroscopy/bioformats
Updating 0cb78d9..06f23c9
Merged PRs (fast-forward):
  # PR 1207 rleigh-dundee 'docs: Merge xsd-fu prerequisites into build instructions'

Merged PRs:
  # PR 1206 sbesson 'Fix bfGetReader for empty input'
  # PR 1213 emilroz 'Czi expand metadata to all the channels'
Repository: ome/scripts
Already up-to-date.

Merged PRs:
  # PR 89 bpindelski 'Avoid division by 0 in Plot Profile.'
Repository: openmicroscopy/ome-documentation
Updating 8004c06..53a820a
Merged PRs (fast-forward):
  # PR 860 mtbc 'move %time% template expansion term to only user-owned'

Merged PRs:
  # PR 862 ximenesuk 'DropBox note'
  # PR 863 sbesson 'OMERO.server properties: documentation template'
  # PR 866 bpindelski 'Document client requirements for in-place import on Windows.'
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