changing libraries from cogent to unittest
changing assertEqualItems -> assert_almost_equal
changing self.assert_almost_equal -> assert_almost_equal
Fixing tests for align_seqs
fixing some of the erros, still 51 scripts to go
fixing some of the erros, still 47 scripts to go
fixing some of the erros, still 43 scripts to go
fixing some of the erros, still 35 scripts to go
removing files that are not longer in use
removing files that are not longer in use
Add fixes to use scipy instead of cogent
Fix failing tests with SciPy
fixing all errors except 4
updating to the latest version in the repo
Fix tests to use numpy's assert_almost_equal
fixing 2 files, missing 1
will it work?
Merge branch 'master' of git://github.com/qiime/qiime into fit-function
Fix failing tests

I blame these differences on things that run using SciPy optimized vs my
local version that is not optimized.
There's rage inside my body, I hate this

This is stupid this is very very stupid.