Use ptools 1.2.6 which addresses Ruby 1.8.7 and 1.9.2 incompatibility.

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
Updated to Bootstrap v3.2

Signed-off-by: Vivek Rai <vivekraiiitkgp@gmail.com>
BS3 upgrade.

TODO:
0. modal#spinner
1. modal#social
2. BLAST buttons
4. notification stutters
5. Results - highlighting focused query report is not working.
6. Use font-awesome. Remove jquery.activity.js.
7. Use min version of all files.
8. Insert JS at the end.

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
Initial experimental code

Backed up original blast.rb file and trying out experimental code in
new file. The code/changes are most likely to be changed drastically in
future commits. Please check further commits for stable code.

added result.erb

Changed result.erb

added l,k,h values to result.erb

Signed-off-by: Vivek Rai <vivekraiiitkgp@gmail.com>
Fixed not showing up of all hits
Added comments, removed old code

Signed-off-by: Vivek Rai <vivekraiiitkgp@gmail.com>
Improved result.erb, minor changes

Signed-off-by: Vivek Rai <vivekraiiitkgp@gmail.com>
Code for correct aligned display of sequences

Tried to used the grid system offered by Bootstrap model but it didn't
work out as expected. Instead I decided to go off working with the
tables. However, the main problem was splittig up the alignments into
multiple rows and displaying properly. This required a lot of
not-nice-looking code. Morever, taking care of Plus/Minus of the hseq
was another tricky case (which again added a even more code). However,
it is working as in the original version.

Signed-off-by: Vivek Rai <vivekraiiitkgp@gmail.com>
Handled case of no hits

The earlier implementation did not handle the cases where no hits were
obtained. This patch fixes the issue.

Signed-off-by: Vivek Rai <vivekraiiitkgp@gmail.com>
Added positives information, minor changes

Signed-off-by: Vivek Rai <vivekraiiitkgp@gmail.com>
added basic graphic overview display

Signed-off-by: Vivek Rai <vivekraiiitkgp@gmail.com>
Partially added data-attrib enabled graph display

The commit intends to implement the Graph display for multiple hits and
alignments using data-attribs which are then used by the client-side JS
to render the graph. I haven't removed the original code YET as there
are some bugs. Particularly, ther scale doesn't appear for few of the
hits in the result. Those will be addressed in next commit perhaps.

Signed-off-by: Vivek Rai <vivekraiiitkgp@gmail.com>