Fixing typos in the documentation
Adding getSeed() method.
Merge branch 'master' into develop
reset now takes a bitmask and supports reseting a variety of items
bump version
Committing changes made in writing stochastic methods (gillespie, gillespieEx, gillespieOnGrid, gillespieOnGridEx), and the process of removing all instances of RRDataHandle simultaneously so that the last two stochastic methods (gillespieMeanOnGrid, gillespieMeanSDOnGrid) would have the same return type and would still be easier to work with.
Merged with latest iteration of RoadRunner
function to map float ids to cm ids. cm species are now mutable with updating cms for conserved species amnts.
set conserved moiety species concentrations
added function in capi to create RRCDataPtr directly from RoadRunner object, updated test suite to NOT use RRDataHandle. @alexdarling, I think this would be of particular interest to you
added example files and parallel ensemble function
Merge branch 'develop' of https://github.com/sys-bio/roadrunner into develop
bump version to final 1.2.5
updated setup.py to install stochastic module
updated NEWS
Created the stochastic analysis group and added gillespie functions with explicit counterparts: gillespie, gillespieOnGrid, gillespieMeanOnGrid, gillespieMeanSDOnGrid
Merge branch 'develop' of https://github.com/sys-bio/roadrunner into develop
Removing HTML files which were added in an accident when updating documentation
ignoring meld backup files
removed meld backup file