added wd to to the write.csv step in MARK analyses so that it commits the file to correct location
deleted steps for reproducing lumped transients across spcecies. New code includes results for all spp
removed PH from species list
removed code to make table of indiv recaps from MARK. Its inefficient and no longer needed
simplified Mark table section, now does it simultaneously for all species and assigns correct benchmark
deleted old PCA plots, made new figures with legend at bottom
added new results for appendix figures on trade-offs
cleaned up figure 1
updated code for fig 3, deleted some repetitious chunks for the histograms
moved figure a1 plot command up in the script so ms figs are together
adding new csv file that holds data for analysis
adding new estimates for individual transient species
adding species table with family and genus in it
updated traits.csv so it contains species names, updated code to auto-addd rownames to amll
deleted means code. I think it was repetitive with other scrits
sent unused code and extra figures to bottom of script for now
added the phylo analyses directly into the main code.