VIVO-773 Update the JENA libraries and adjust to the changes

Replace the JAR files with more current ones.
Add a one-line change to BaseInfGraph (from the Jena source), so it will work with Pellet 2.3.1
Adjust all implementations of Graph to include new methods and remove old ones.
Add annotations and generics to reduce compiler warnings.
Remove all dependencies on RDB, which is no longer supported.
   This requires considerable refactoring of JenaIngestController, RDFUploadController, listModels.jsp
Refactor the ModelMaker uses
   Remove VitroJenaModelMaker,
   Revise VitroInterceptingModelMaker to be configurable for Config or Content models
Add debug logging code to ModelChangeImpl ChangeSetImpl, RDFServiceJena.
Add TDB support: RDFServiceFactoryTDB, RDFServiceTDB
   Refactor RDFServiceJena and RDFServiceSDB so much of the code can be reused by RDFServiceTDB
Accomodate two RDFService instances - one for Configuration models and one for Content models.
   Changes to RDFServiceUtils, RDFServiceSetup
   Configuration models use TDB directory in Vitro home directory
Handle bulk updating:
   Jena has deprecated bulk operations, and their models classes no longer use the bulk updaters
   Create a VitroModelFactory to use instead of the ModelFactory, when bulk updating is required.
   Create adapter classes: BulkUpdatingModel, BulkUpdatingOntModel, AbstractModelDecorator
Make the configuration model setup algorithms uniform
   Combine ApplicationModelSetup and UserModelSetup into ConfigurationModelsSetup
VIVO-773 Remove "connectDB" function of advanced data tools.

It was tied up with RDB. It could have been converted, but there was little interest.
VIVO-719 Create a method on RDFService for a streaming SELECT query.

By passing an OutputStream to the method, we don't buffer the entire response into memory.
VIVO-719 Create the dump/restore tool - no restore yet.
VIVO-719 Create the first attempt at restore.
VIVO-719 Add "bucketing" to optimize the restore.
VIVO-719 Fix an error in the JSON parsing.
VIVO-719 Add some log statements so we can follow the progress.
VIVO-719 Don't use streaming unless required.

At some point we need to find out who is not closing connections.
VIVO-719 Improve the user interface
VIVO-773 guard against RDB data that has not been migrated.
Merge commit 'a83c1e5e4fac33e8c09f964b7313ec53de8946fc' into feature/TDBfromRDB2