Version 1.1 - pathway adjusted to first run against fasta file then find BT reads, create new OTUs for the BT reads and the finally run the entire sample against the OTU reference
Version 1.2 The inital and OTU run have been fully seperated that so that results in both cases are saved. However if not OTU reference database is found it may wipeout the initial run's data and thus only OTU data is saved. This bug will be fixed in the next version
Version 1.3 This version has an updated pathway: Stirrups against OTU database if exsists -> Stirrups against normal database -> Check the OTU hits (OTU assignment file) for those sequences BT and create new OTUs based on these. If the OTU database does not exsist then it first runs the sample against normal reference database and creates a new OTU database that includes the normal reference + new OTU categories.
Version 1.3 Committing again