oops, change LSF queue for map_reads_to_ref [ci skip]
initial run of TestToolsInstallation didnt work in Travis Py2.7, switch to python unittest
default LSF submission as re-runnable jobs in case of node failure [ci skip]
modify double refinement parameters [ci skip]
more resources for ref_guided_diversity [ci skip]
no rename [ci skip]
string params [ci skip]
give align_and_orient more runtime [ci skip]
dedupe depends [ci skip]
all fasta indexing should just overwrite old indexes
add JVMmemory option for most depletion/filtration steps
Merge pull request #56 from broadinstitute/dpark-dev

pipeline refinements