Fix travis?
Merge pull request #283 from rmcgibbo/fix-travis

Fix travis?
Remove dihedralindices command

This functionality is built in to the Dihedral
Featurizer
Rename hmm and msm modules

hiddenmarkovmodel -> hmm
markovstatemodel -> msm
Add aliases for backwards compatiblity
Update setup.py for new extension locations
Update tests
Update relative imports
Remove fit[g,vm]hmm commands

These should use the generic fit command base class
Remove "unpack" command (just an empty file)
Remove commands for pulling structures

This sort of thing depends on how we implement data
saving / loading
Mixins is now unnecessary
Merge pull request #286 from mpharrigan/prune_old_commands

Prune old commands
Missed a relative import
Merge pull request #285 from mpharrigan/moves_and_aliases

Moves and aliases
Move docstring for met enk

I must have missed this on the first pass
Merge pull request #291 from mpharrigan/dataset_fix

Move docstring for met enk
merge in master