[SPARK-2617] Correct doc and usages of preservesPartitioning

The name `preservesPartitioning` is ambiguous: 1) preserves the indices of partitions, 2) preserves the partitioner. The latter is correct and `preservesPartitioning` should really be called `preservesPartitioner` to avoid confusion. Unfortunately, this is already part of the API and we cannot change. We should be clear in the doc and fix wrong usages.

This PR

1. adds notes in `maPartitions*`,
2. makes `RDD.sample` preserve partitioner,
3. changes `preservesPartitioning` to false in  `RDD.zip` because the keys of the first RDD are no longer the keys of the zipped RDD,
4. fixes some wrong usages in MLlib.