Added updates for vcftools and some minor tweaks
completed GATK tasklets up to and including annotation. Builds and runs
ok (web and daemon) and ready for testing.
fixed incorrect fetching of all library times when getting a list of
cell libraries
fixed samplesource dao to ensure only sample of a particular sampletype
are retuned
updated deleted attributes (set to 0 instead of null) fro file and
filegroup tables
improved logic for getting biomolecule
improved logic for getting genome string from library and added more logging
Merge branch 'develop' into variantCalling
attempt to make several connections over long running
(hopefully rare) executions.
Merge branch 'develop' of http://frankfurt.aecom.yu.edu/git/wasp/blessedRepository into develop
Merge branch 'develop' into variantCalling
cleaned up
updated to allow saving of snpeff html summary
improved linking of filegroups via derived
* Fixed missing max button on the view panels
Merge branch 'bugfix-panel-maxbtn-missing' into develop
Merge branch 'develop' into variantCalling
fixed hibernate query