OPT: changed default values (DWI group and spline reg)
OPT: restructure the code and data organization of the template/atlas to enable to extract metrics from CSF, WM, GM as well as from tracts of the WM atlas
TEST: testing of the modifications made to sct_extract_metric.py
BUG: fixed issue in generate_output_file(), if path_in and path_out are the same
NEW: convert minc to nifti
OPT: updated sct_warp_template to be compatible with the new version of sct_extract_metric
OPT: moco/T2
OPT: updated algo to take into account slices of interest
OPT: updated sct_warp_template.py concerning spinal levels warping
OPT: now warp MNI-Poly-AMU_cord.nii.gz
TEST: update testing for sct_warp_template
OPT: fixed some "TODO" (check file existence, usage displaying, …) of sct_extract_metric.py
TEST: create testing of sct_extract_metric.py
OPT: update info_label.txt from both /template and /atlas
REF: rename spinal_level folder in spinal_levels for more consistency
OPT: enable to select slices and write labels name in .txt output file
OPT: enable to select slices and vertebral levels to extract the metric from. Also add testing for these functions.
DOC: update comments
BUG: floating-point exception on gap computation in spinal cord detection module. Source code fixed
BUG: fix bug related to reading of info_label.txt + now the script doesn't crop the data according to the labels selected by the user anymore (estimates metric for all labels and then outputs the selected ones).