fixed strandedness issue in parsegdfile_new_base
change absolute to relative paths
add and print mutated genes in gds-gene_rank
print top mutating genes, put gene_rank_parameters in diff't, and earlier, fxn
incorporate mutation params in gene rank param fxn
fixed erroneous indenting
reverse sort mutgenerank for cleanliness
trying to split intergenic by /
fix intergenic splitting of gene_name, trying to make bar chart of #mutation vs. gene
"get 'for' loops for snpmutate down, comment out graphing"
add comment about gene ranking (by file, not by mutation)
separate out make_record and get_refseq so get_genecoords can be added
add dNdS_calculate work
get_genecoords now working. go to dn/ds or snpmutate
Add numpy-based gene-mutating function
Merge pull request #6 from camillescott/ejb_master

Add numpy-based gene-mutating function
annotate and add LTE lines at 50K
add NOTE and MC to parse_gdfiles line.startswith() continues
add a comment
understanding, clean up, commenments