Build a static RMSD library, and factor out stuff into setupbase.py
add function to give the CAPI paths
change to inclue_dir and lib_dir
py3k fix
move compiler detection into subshell
Add center to libtheobald
linkable from c++ projects
Fix for windows
tabs/spaces
Merge branch 'master' into static_rmsd_library
Merge branch 'static_rmsd_library' of github.com:SimTk/mdtraj into static_rmsd_library
Merge pull request #660 from mdtraj/static_rmsd_library

Static RMSD library