Update references
Update sample config
script updated to NGSANE version 0.4.0.1
Merge branch 'master' of github.com:clark-lab/ngsane

Conflicts:
	doc/installation/setup
citation updated
Bugfix handle QC for specific libraries if requested
Create additional bigbeds
Cleanup
Bugfix hicup plots
Cleanup
Bugfix default input
parameter fixed
Bugfix motif detection for fimo run
Bugfix peak output into logfile
Bedtools depenency added
report generation for fastqc now detects libraries based on logfiles rather than input
Bugfix fastqc summary, read pairs merged into common section
Bugfix top motif and logo selection focusing on meme results
cleanup
Merge remote-tracking branch 'allpower/master'