merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only: PR 2412 (Extra annotations)
merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only

Repository: openmicroscopy/openmicroscopy
Excluded PRs:
  # PR 2979 will-moore 'Thumbnail cache busting' (user: will-moore)
  # PR 3005 dominikl 'Rendering settings unification' (user: dominikl)
  # PR 2970 will-moore 'Bugfixes for 5 0 4' (user: will-moore)
  # PR 3000 jballanc 'Update artifacts for Lucene, Hibernate, and Spring' (user: jballanc)
  # PR 2994 chris-allan 'Ensure that identity request variables are UTF-8 encoded' (user: chris-allan)
  # PR 2363 dominikl 'Java Gateway API' (label: exclude)
  # PR 2962 sbesson 'Flake8 omero.cli' (user: sbesson)
  # PR 2835 simleo 'Update OmeroPy/src/path.py' (user: simleo)
  # PR 3023 joshmoore 'Server unit tests (rebased onto develop)' (user: joshmoore)
  # PR 3015 joshmoore 'Improve pixel data log handling' (user: joshmoore)
  # PR 2182 joshmoore 'Read only flag' (user: joshmoore)
  # PR 3016 dpwrussell 'Jquery update migration (Part 1 of n)' (user: dpwrussell)
  # PR 3019 aleksandra-tarkowska 'refactoring settings.py' (user: aleksandra-tarkowska)
  # PR 3027 dominikl 'Fix: Instantly apply text color change' (user: dominikl)
  # PR 3010 rleigh-dundee 'cmake: Use embedded gtest from bioformats' (user: rleigh-dundee)
  # PR 3020 aleksandra-tarkowska 'adding web settings parser' (user: aleksandra-tarkowska)
  # PR 3004 kennethgillen 'Update webadmin_utils.py with downloads.o.org link instead of trac.o.org ' (user: kennethgillen)
  # PR 3025 will-moore 'Preview panel 2' (user: will-moore)
  # PR 3018 snoopycrimecop 'Update develop submodules' (user: snoopycrimecop)
  # PR 2585 aleksandra-tarkowska 'making time_zone and first_day_of_week configurable' (exclude comment)
  # PR 3026 aleksandra-tarkowska 'Long line wrapping' (user: aleksandra-tarkowska)
  # PR 2895 dominikl 'Reload groups after users added/removed' (user: dominikl)
  # PR 2987 rleigh-dundee 'travis: Build with Oracle JDK 8' (user: rleigh-dundee)
  # PR 2985 will-moore 'Download preserves directories of original files' (user: will-moore)
Already up-to-date.

Merged PRs:
  # PR 2412 qidane 'Extra annotations'

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (user: melissalinkert)
  # PR 1309 melissalinkert 'Allow tile-based access of large JPEG-2000 images' (exclude comment)
  # PR 1015 qidane 'Messy binary' (exclude comment)
  # PR 1177 rleigh-dundee 'specification: Add metadata for HDF5 embedding' (exclude comment)
  # PR 1317 melissalinkert 'Gatan: fix physical dimension parsing when the Z size is missing' (user: melissalinkert)
  # PR 1328 sbesson 'Use in-place caching by default in Memoizer' (user: sbesson)
  # PR 1340 joshmoore 'kryo: update to 2.24.0 with shading changes (see #10852)' (user: joshmoore)
  # PR 1154 melissalinkert 'Leica: prevent exception when linking EmissionFilter' (user: melissalinkert)
  # PR 1331 rleigh-dundee 'C++: Add FormatWriter interface' (user: rleigh-dundee)
  # PR 1315 LeeKamentsky 'IM3Reader for Perkin-Elmer Nuance' (user: LeeKamentsky)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (user: melissalinkert)
  # PR 1265 qidane 'New units' (label: exclude)
  # PR 1324 melissalinkert 'Deltavision: conditionally ignore stage position values of 0' (user: melissalinkert)
  # PR 1249 PremyslFiala 'ND2 - Bug fixes' (user: PremyslFiala)
  # PR 1339 melissalinkert 'Amaris FlowSight' (user: melissalinkert)
  # PR 1161 sommerc 'Initial CellH5 Reader class' (user: sommerc)
  # PR 816 melissalinkert 'Add support for multi-channel Volocity Clipping datasets' (user: melissalinkert)
  # PR 1296 melissalinkert 'Add test for getRequiredDirectories' (user: melissalinkert)
  # PR 1336 melissalinkert 'Minor memoizing fixes' (user: melissalinkert)
  # PR 1302 sbesson 'Add branch-specific link for downloading the JAR file if unfound (rebased onto develop)' (user: sbesson)
  # PR 1335 melissalinkert 'ND2: prevent NumberFormatExceptions when parsing text data (rebased onto develop)' (user: melissalinkert)
  # PR 1323 melissalinkert 'Add bit-level operations to RandomAccess{Input, Output}Stream' (user: melissalinkert)
Updating c6fa36a..0819d22
Previously merged:
  # PR 1306 ctrueden 'Add support for PrairieView version 5.2 datasets'
  # PR 1337 hflynn 'Update NIS elements viewer software link'
  # PR 1334 rleigh-dundee 'cpp: Windows fixes for embedded gtest'
  # PR 1311 melissalinkert 'Performance and position count fixes for ND2 (rebased onto develop)'
  # PR 1322 rleigh-dundee 'cpp: Add embedded gtest'
  # PR 1330 rleigh-dundee 'doc: Work with sphinx 1.2.3'
  # PR 1332 melissalinkert 'Revert "Update POM version numbers to 5.1.0-m1"'
  # PR 1329 sbesson 'Use ome.staging for Maven release deployment'

Merged PRs:
  # PR 1054 qidane 'Additional annotation points throughout the model'

Repository: ome/scripts
Already up-to-date.

Repository: openmicroscopy/ome-documentation
Excluded PRs:
  # PR 984 aleksandra-tarkowska 'adding support for django directives' (user: aleksandra-tarkowska)
  # PR 973 hflynn 'Team workflow doc' (user: hflynn)
Updating 4605edd..01a91b2
Previously merged:
  # PR 975 ximenesuk 'Expose upload_rm option in the documentation'
  # PR 981 hflynn 'Adding repo cloning to 'using git' guide'

Generated by OME-5.1-breaking-push#78 (http://ci.openmicroscopy.org/job/OME-5.1-breaking-push/78/)