Use curl (not wget) to avoid confusing Mac users
Update README.md
Show the default snpEff command in usage syntax
Handle new transcript biotypes
Add SPLICE_SITE_REGION effect; Fix INTRAGENIC/RNA
Handle exception of /=/ in a VCF INFO value
Raise JVM heap limit; Avoid a warning
Add a test.vcf for a quicker start
Support VEP; Better transcript selection
Better VEP transcript selection
Describe default transcript selection criteria
Merge pull request #1 from mskcc/master

Describe default transcript selection criteria
Minor updates to README for clarity
Handle multi-allelic vars; Output allele depths
Support complex indels; Fix link in docs
New test vcf with genotype fields
Created new test VCFs to play with
Better test vcfs; Better docs and CLI args
Hotfix for snpEff/VEP prerun checks
Hotfix VarScan VCFs that store Ref depth separately